6HE3
Pseudomonas aeruginosa Seryl-tRNA Synthetase in Complex with 5'-O-(N-(L-seryl)-sulfamoyl)cytidine
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID23-1 |
| Synchrotron site | ESRF |
| Beamline | ID23-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-12-17 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.972422 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 151.006, 122.183, 65.489 |
| Unit cell angles | 90.00, 114.67, 90.00 |
Refinement procedure
| Resolution | 43.200 - 2.160 |
| R-factor | 0.188 |
| Rwork | 0.187 |
| R-free | 0.21500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Model generated using 2DQ3 as a template |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.070 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.6.2) |
| Phasing software | PHASER (1.13-2998) |
| Refinement software | BUSTER (2.10.3) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 91.250 | 91.250 | 2.210 |
| High resolution limit [Å] | 2.100 | 6.630 | 2.100 |
| Rmerge | 0.056 | 0.030 | 0.605 |
| Rmeas | 0.067 | 0.036 | 0.713 |
| Rpim | 0.036 | 0.019 | 0.374 |
| Total number of observations | 214186 | ||
| Number of reflections | 62738 | 2035 | 9170 |
| <I/σ(I)> | 11.7 | ||
| Completeness [%] | 99.3 | 99.1 | 99.5 |
| Redundancy | 3.4 | 3.3 | 3.5 |
| CC(1/2) | 0.998 | 0.998 | 0.752 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | Holo protein, concentrated to 10 mg/mL in 10 mM Tris pH 7, 100 mM NaCl, 5mM DTT, was mixed with an equal volume of 100 mM Tris pH 8, 200 mM NaCl, 23% w/v PEG 3350 and 5% v/v ethylene glycol. Suitable crystals were soaked with 2 mM 5'-O-(N-(L-seryl)-sulfamoyl)N3-cytidine in a solution similar to the crystallization condition but containing 22% v/v ethylene glycol. |






