6HBS
Structure of PLP internal aldimine form of Sphingopyxis sp. MTA144 FumI protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.180, 104.419, 65.250 |
Unit cell angles | 90.00, 109.26, 90.00 |
Refinement procedure
Resolution | 46.830 - 1.650 |
R-factor | 0.17099 |
Rwork | 0.169 |
R-free | 0.20189 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bs8 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.391 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.830 | 1.709 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.057 | 0.676 |
Rmeas | 0.068 | 0.818 |
Rpim | 0.037 | 0.456 |
Number of reflections | 95437 | 9514 |
<I/σ(I)> | 12.4 | 1.57 |
Completeness [%] | 99.6 | 99.09 |
Redundancy | 3.2 | 3 |
CC(1/2) | 0.999 | 0.712 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M HEPES, pH 7.0 0.1 M Ammonium Sulfate 30 % (w/v) Polyacrylate, sodium salt |