Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H6Y

GI.1 human norovirus protruding domain in complex with Nano-7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-05
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.973720
Spacegroup nameP 1 21 1
Unit cell lengths59.170, 140.900, 92.150
Unit cell angles90.00, 91.81, 90.00
Refinement procedure
Resolution47.535 - 1.580
R-factor0.1556
Rwork0.155
R-free0.17480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2zl5
RMSD bond length0.004
RMSD bond angle0.807
Data reduction softwareXDS (VERSION Jun 1, 2017)
Data scaling softwareXSCALE (VERSION Jun 1, 2017)
Phasing softwarePHASER
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.5401.630
High resolution limit [Å]1.5801.580
Rmerge0.0550.474
Rmeas0.0660.567
Rpim0.0350.307
Number of reflections20145919534
<I/σ(I)>11.72.05
Completeness [%]97.694.62
Redundancy3.43.3
CC(1/2)0.9980.770
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.17 M ammonium acetate, 0.085 M sodium citrate (pH 5.6), 15% (v/v) glycerol and 25.5% (w/v) PEG4000

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon