6H6Y
GI.1 human norovirus protruding domain in complex with Nano-7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.973720 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.170, 140.900, 92.150 |
Unit cell angles | 90.00, 91.81, 90.00 |
Refinement procedure
Resolution | 47.535 - 1.580 |
R-factor | 0.1556 |
Rwork | 0.155 |
R-free | 0.17480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zl5 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.807 |
Data reduction software | XDS (VERSION Jun 1, 2017) |
Data scaling software | XSCALE (VERSION Jun 1, 2017) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.540 | 1.630 |
High resolution limit [Å] | 1.580 | 1.580 |
Rmerge | 0.055 | 0.474 |
Rmeas | 0.066 | 0.567 |
Rpim | 0.035 | 0.307 |
Number of reflections | 201459 | 19534 |
<I/σ(I)> | 11.7 | 2.05 |
Completeness [%] | 97.6 | 94.62 |
Redundancy | 3.4 | 3.3 |
CC(1/2) | 0.998 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.17 M ammonium acetate, 0.085 M sodium citrate (pH 5.6), 15% (v/v) glycerol and 25.5% (w/v) PEG4000 |