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6GYV

Lariat-capping ribozyme (circular permutation form)

Replaces:  4P95
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2012-03-29
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.6
Spacegroup nameP 21 21 21
Unit cell lengths57.630, 85.710, 108.530
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.824 - 2.500
R-factor0.200698514255
Rwork0.198
R-free0.24490
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4p9r
RMSD bond length0.002
RMSD bond angle0.521
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareSHELX
Refinement softwarePHENIX (1.11rc1_2513)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8302.589
High resolution limit [Å]2.5002.500
Number of reflections34663
<I/σ(I)>3.16
Completeness [%]96.5
Redundancy7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 Sodium chloride, 0.1 M BIS-TRIS pH 6.5, 25% w/v PEG 3,350 or (ii) 0.2 Sodium chloride, 0.1 M HEPES pH 7.5, 25% w/v PEG 3,350

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