6GW1
GII.10 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.972640 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 107.850, 79.670, 87.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.930 - 1.900 |
R-factor | 0.1667 |
Rwork | 0.165 |
R-free | 0.18990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3onu |
RMSD bond length | 0.005 |
RMSD bond angle | 0.750 |
Data reduction software | XDS (VERSION Nov 1, 2016) |
Data scaling software | XSCALE (VERSION Nov 1, 2016) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.930 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.067 | 0.655 |
Rmeas | 0.072 | 0.716 |
Rpim | 0.028 | 0.284 |
Number of reflections | 60120 | 5732 |
<I/σ(I)> | 16.89 | 2.49 |
Completeness [%] | 99.4 | 96.4 |
Redundancy | 6.4 | 6.2 |
CC(1/2) | 0.999 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0,1M Magnesium acetate tetrahydrate 0,1M Sodium citrate pH 5.8 14% w/v PEG 5000 MME |