6GW0
GII.1 human norovirus protruding domain in complex with taurochenodeoxycholate (TCDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-26 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967700 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 74.450, 99.200, 79.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.692 - 1.400 |
R-factor | 0.1495 |
Rwork | 0.148 |
R-free | 0.16760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rox |
RMSD bond length | 0.007 |
RMSD bond angle | 0.883 |
Data reduction software | XDS (VERSION Jun 1, 2017) |
Data scaling software | XSCALE (VERSION Jun 1, 2017) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.550 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.037 | 0.467 |
Rmeas | 0.039 | 0.494 |
Rpim | 0.011 | 0.158 |
Number of reflections | 57934 | 5641 |
<I/σ(I)> | 41.85 | 4.93 |
Completeness [%] | 99.7 | 98.34 |
Redundancy | 13.2 | 9.5 |
CC(1/2) | 1.000 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0,1 M Magnesium acetate tetrahydrate 0,1 M Sodium citrate 5,8 14 % w/v PEG 5000 MME |