6GVZ
GII.1 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-26 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967700 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 74.980, 99.390, 79.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.892 - 1.540 |
R-factor | 0.1689 |
Rwork | 0.168 |
R-free | 0.18890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rox |
RMSD bond length | 0.006 |
RMSD bond angle | 0.837 |
Data reduction software | XDS (VERSION Jun 1, 2017) |
Data scaling software | XSCALE (VERSION Jun 1, 2017) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.860 | 1.590 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.057 | 0.667 |
Rmeas | 0.059 | 0.694 |
Rpim | 0.016 | 0.188 |
Number of reflections | 44174 | 4133 |
<I/σ(I)> | 27.7 | 3.57 |
Completeness [%] | 99.4 | 94.22 |
Redundancy | 13.7 | 13.3 |
CC(1/2) | 0.999 | 0.938 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0,1M Sodium chloride 0,005 M Magnesium chloride hexahydrate 0,1 M Tris 8,5 30 % w/v PEG 2000 MME |