6GKW
Crystal structure of the R-type bacteriocin sheath protein CD1363 from Clostridium difficile in the pre-assembled state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 75.935, 47.878, 112.500 |
Unit cell angles | 90.00, 92.25, 90.00 |
Refinement procedure
Resolution | 38.352 - 1.900 |
R-factor | 0.2149 |
Rwork | 0.213 |
R-free | 0.24850 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.3) |
Phasing software | AutoSol |
Refinement software | PHENIX (dev_3112) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.490 | 40.490 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.085 | 0.040 | 1.507 |
Rmeas | 0.088 | 0.042 | 1.566 |
Rpim | 0.024 | 0.011 | 0.421 |
Number of reflections | 32088 | 316 | 2087 |
<I/σ(I)> | 21.5 | ||
Completeness [%] | 99.9 | 99.1 | 99.8 |
Redundancy | 13.5 | 13.3 | 13.3 |
CC(1/2) | 1.000 | 0.999 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.0 M Lithium chloride, 0.1 M Tris pH 8.0, 20% (w/v) PEG 6000 |