Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GH2

Paenibacillus sp. YM1 laminaribiose phosphorylase with alpha-glc-1-phosphate bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2016-10-02
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9800
Spacegroup nameP 41 21 2
Unit cell lengths146.405, 146.405, 221.860
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution75.690 - 2.500
R-factor0.1813
Rwork0.179
R-free0.21750
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)6ggy
RMSD bond length0.009
RMSD bond angle1.340
Data reduction softwareXDS
Data scaling softwareAimless (0.5.31)
Phasing softwareREFMAC
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]75.69075.6902.550
High resolution limit [Å]2.50012.9902.500
Rmerge0.2170.0351.809
Rmeas0.2230.0361.859
Rpim0.0510.0090.424
Total number of observations1492934
Number of reflections838747254529
<I/σ(I)>13.6
Completeness [%]100.099.6100
Redundancy17.814.818.2
CC(1/2)0.9981.0000.624
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Null

250059

PDB entries from 2026-03-04

PDB statisticsPDBj update infoContact PDBjnumon