6GBQ
Crystal Structure of the oligomerization domain of Vp35 from Reston virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.27982 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.230, 45.583, 110.777 |
Unit cell angles | 90.00, 101.66, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.430 |
R-factor | 0.249 |
Rwork | 0.247 |
R-free | 0.29300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6gbr |
RMSD bond length | 0.008 |
RMSD bond angle | 1.112 |
Data reduction software | XDS (Nov 1, 2016) |
Data scaling software | Aimless (0.5.28) |
Phasing software | MOLREP (11.4.06) |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.520 | 47.520 | 2.520 |
High resolution limit [Å] | 2.430 | 9.090 | 2.430 |
Rmerge | 0.059 | 0.048 | 0.917 |
Rmeas | 0.064 | 0.053 | 0.996 |
Rpim | 0.025 | 0.021 | 0.384 |
Total number of observations | 172008 | ||
Number of reflections | 26031 | 514 | 2731 |
<I/σ(I)> | 15.5 | ||
Completeness [%] | 98.9 | 94.9 | 99.4 |
Redundancy | 6.6 | 5.6 | 6.6 |
CC(1/2) | 0.999 | 0.998 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 277 | 20 % PEG-6000: 100 mM Na-acetate |