6GBG
Helicobacter pylori adhesin HopQ type I bound to the N-terminal domain of human CEACAM1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 94.430, 94.430, 119.700 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 67.520 - 2.800 |
R-factor | 0.20471 |
Rwork | 0.201 |
R-free | 0.26328 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lp2 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.457 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.520 | 2.850 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.147 | |
Rpim | 0.047 | 0.538 |
Number of reflections | 15692 | 760 |
<I/σ(I)> | 13.6 | 1.6 |
Completeness [%] | 100.0 | 99.6 |
Redundancy | 10.5 | 10.7 |
CC(1/2) | 0.998 | 0.628 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | Condition B3 of the Morpheus HT-96 screen (Molecular Dimensions)(0.09 M Halogens mix (0.3M Sodium fluoride; 0.3M Sodium bromide; 0.3M Sodium iodide), 0.1 M Buffer System 1 (1.0M Imidazole; MES monohydrate (acid); pH 6.5), 50 % v/v Precipitant Mix 3 (40% v/v Glycerol; 20% w/v PEG 4000) |