6G40
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH9525
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.860, 81.335, 168.593 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 81.340 - 2.490 |
R-factor | 0.22013 |
Rwork | 0.218 |
R-free | 0.26258 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ebm |
RMSD bond length | 0.007 |
RMSD bond angle | 1.138 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.340 | 2.550 |
High resolution limit [Å] | 2.490 | 2.490 |
Rmerge | 0.077 | 0.948 |
Rmeas | 0.083 | 1.028 |
Rpim | 0.032 | 0.396 |
Number of reflections | 39789 | 2906 |
<I/σ(I)> | 17.2 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13 | 12.8 |
CC(1/2) | 0.999 | 0.525 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294 | 0.12 M Monosaccharides, 0.1 M Buffer System 2 pH 7.5, 50 % v/v Precipitant Mix 3 (Morpheus screen, Molecular Dimensions) |