6G40
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH9525
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04 |
| Synchrotron site | Diamond |
| Beamline | I04 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-01-19 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9795 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 80.860, 81.335, 168.593 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 81.340 - 2.490 |
| R-factor | 0.22013 |
| Rwork | 0.218 |
| R-free | 0.26258 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1ebm |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.138 |
| Data reduction software | DIALS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 81.340 | 2.550 |
| High resolution limit [Å] | 2.490 | 2.490 |
| Rmerge | 0.077 | 0.948 |
| Rmeas | 0.083 | 1.028 |
| Rpim | 0.032 | 0.396 |
| Number of reflections | 39789 | 2906 |
| <I/σ(I)> | 17.2 | 2.3 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 13 | 12.8 |
| CC(1/2) | 0.999 | 0.525 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294 | 0.12 M Monosaccharides, 0.1 M Buffer System 2 pH 7.5, 50 % v/v Precipitant Mix 3 (Morpheus screen, Molecular Dimensions) |






