Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6G40

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH9525

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2018-01-19
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9795
Spacegroup nameP 21 21 21
Unit cell lengths80.860, 81.335, 168.593
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution81.340 - 2.490
R-factor0.22013
Rwork0.218
R-free0.26258
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ebm
RMSD bond length0.007
RMSD bond angle1.138
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]81.3402.550
High resolution limit [Å]2.4902.490
Rmerge0.0770.948
Rmeas0.0831.028
Rpim0.0320.396
Number of reflections397892906
<I/σ(I)>17.22.3
Completeness [%]100.0100
Redundancy1312.8
CC(1/2)0.9990.525
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52940.12 M Monosaccharides, 0.1 M Buffer System 2 pH 7.5, 50 % v/v Precipitant Mix 3 (Morpheus screen, Molecular Dimensions)

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon