6G11
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikE with the HMA domain of Pikp-1 from rice (Oryza sativa)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.196, 80.177, 105.627 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.290 - 1.900 |
R-factor | 0.20954 |
Rwork | 0.209 |
R-free | 0.22443 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5a6w |
RMSD bond length | 0.014 |
RMSD bond angle | 1.614 |
Data reduction software | xia2 (0.5.328) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.290 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.100 | |
Number of reflections | 45720 | |
<I/σ(I)> | 14.5 | |
Completeness [%] | 100.0 | |
Redundancy | 12 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.06M Divalents (0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dihydrate); 0.1M Buffer system 1 (1M Imidazole; MES monohydrate (acid)) pH 6.5; 50% v/v Precipitant mix 4 (25%v/v MPD; 25%v/v PEG 1000; 25%v/v PEG3350) |