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6G11

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikE with the HMA domain of Pikp-1 from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2016-12-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9763
Spacegroup nameP 21 21 21
Unit cell lengths67.196, 80.177, 105.627
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.290 - 1.900
R-factor0.20954
Rwork0.209
R-free0.22443
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5a6w
RMSD bond length0.014
RMSD bond angle1.614
Data reduction softwarexia2 (0.5.328)
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.6.1)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2901.940
High resolution limit [Å]1.9001.900
Rmerge0.100
Number of reflections45720
<I/σ(I)>14.5
Completeness [%]100.0
Redundancy12
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52930.06M Divalents (0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dihydrate); 0.1M Buffer system 1 (1M Imidazole; MES monohydrate (acid)) pH 6.5; 50% v/v Precipitant mix 4 (25%v/v MPD; 25%v/v PEG 1000; 25%v/v PEG3350)

222036

PDB entries from 2024-07-03

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