6FUV
Structure of a manno-oligosaccharide specific solute binding protein, BlMnBP2 from Bifidobacterium animalis subsp. lactis ATCC 27673 in complex with mannotriose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.99999 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.170, 64.590, 133.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.585 - 2.001 |
R-factor | 0.1819 |
Rwork | 0.178 |
R-free | 0.25060 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.12_2829) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.585 | 40.585 | 2.073 |
High resolution limit [Å] | 2.000 | 10.000 | 2.000 |
Rmerge | 0.229 | 0.044 | 1.137 |
Rmeas | 0.054 | ||
Rpim | 0.150 | 0.776 | |
Number of reflections | 28205 | 289 | 1657 |
<I/σ(I)> | 4.45 | 18.34 | 0.64 |
Completeness [%] | 90.3 | 95.1 | 53.66 |
Redundancy | 3.027 | 2.92 | 2.099 |
CC(1/2) | 0.968 | 0.996 | 0.388 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 278 | Reservoir: 0.1 M MES pH 5.5, 0.05 M Zn-acetate and 18% PEG 8000 Protein 15 mg/ml in 20 mM MES pH 6.5, 150 mM NaCl + 1 mM Mannotriose. Drops ratio 1/1 |