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6FUB

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikE with the HMA domain of Pikm-1 from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-28
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths30.023, 54.345, 48.493
Unit cell angles90.00, 90.53, 90.00
Refinement procedure
Resolution23.700 - 1.300
R-factor0.14296
Rwork0.141
R-free0.17854
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5a6w
RMSD bond length0.018
RMSD bond angle1.925
Data reduction softwarexia2
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]23.7001.320
High resolution limit [Å]1.3001.300
Rmerge0.071
Number of reflections38170
<I/σ(I)>12.9
Completeness [%]99.4
Redundancy7.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52930.1M Amino acids (0.2M L-Na-Glutamate; 0.2M Alanine (racemic); 0.2M Glycine; 0.2M Lysine HCl (racemic); 0.2M Serine (racemic)); 0.1M Buffer system 2 (1M sodium HEPES, MOPS (acid)) pH 7.5; 50% v/v Precipitant mix 2 (40% v/v Ethylene glycol; 20 % w/v PEG 8000)

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PDB entries from 2024-08-28

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