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6FU9

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain of Pikm-1 from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2016-01-23
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.91680
Spacegroup nameP 21 21 21
Unit cell lengths37.090, 87.130, 103.840
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.040 - 1.200
R-factor0.15025
Rwork0.149
R-free0.18435
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5a6w
RMSD bond length0.019
RMSD bond angle1.902
Data reduction softwarexia2 (0.4.0.0)
Data scaling softwareAimless (0.5.17)
Phasing softwarePHASER (2.6.1)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.0401.230
High resolution limit [Å]1.2001.200
Rmerge0.049
Number of reflections104301
<I/σ(I)>21.7
Completeness [%]98.5
Redundancy11.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52930.12M Ethylene glycols (0.3M Diethylene glycol; 0.3M Triethylene-glycol; 0.3M Tetraethylene glycol; 0.3M Pentaethylene glycol); 0.1M Buffer system 3 (1M Tris (base); BICINE) pH 8.5; 50% v/v Precipitant mix 2 (40% v/v Ethylene glycol; 20 % w/v PEG 8000)

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PDB entries from 2026-01-28

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