6FU9
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain of Pikm-1 from rice (Oryza sativa)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-01-23 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.91680 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 37.090, 87.130, 103.840 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.040 - 1.200 |
| R-factor | 0.15025 |
| Rwork | 0.149 |
| R-free | 0.18435 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5a6w |
| RMSD bond length | 0.019 |
| RMSD bond angle | 1.902 |
| Data reduction software | xia2 (0.4.0.0) |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | PHASER (2.6.1) |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 29.040 | 1.230 |
| High resolution limit [Å] | 1.200 | 1.200 |
| Rmerge | 0.049 | |
| Number of reflections | 104301 | |
| <I/σ(I)> | 21.7 | |
| Completeness [%] | 98.5 | |
| Redundancy | 11.9 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.12M Ethylene glycols (0.3M Diethylene glycol; 0.3M Triethylene-glycol; 0.3M Tetraethylene glycol; 0.3M Pentaethylene glycol); 0.1M Buffer system 3 (1M Tris (base); BICINE) pH 8.5; 50% v/v Precipitant mix 2 (40% v/v Ethylene glycol; 20 % w/v PEG 8000) |






