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6FS8

Influenza B/Memphis/13/03 endonuclease with bound inhibitor, baloxavir acid (BXA)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.254
Spacegroup nameP 43
Unit cell lengths59.820, 59.820, 125.890
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution59.860 - 1.800
R-factor0.18494
Rwork0.183
R-free0.21507
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB:5FML
RMSD bond length0.010
RMSD bond angle1.437
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.8601.850
High resolution limit [Å]1.8001.800
Rmerge0.0640.471
Number of reflections37506
<I/σ(I)>13.62.6
Completeness [%]91.893.7
Redundancy3.63.4
CC(1/2)0.9980.862
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293Protein, at 15-17 mg/ml, was incubated with 10-fold molar excess of BXA for 30 min at RT, mixtures were centrifuged at RT for 5 minutes at 12000 g, and soluble fraction was used for crystallization trials (final protein concentration 8-10 mg/ml). Mother liquor was 0.2 M NaCl, 0.1 M Na(CH3)2AsO2 pH 6.5, 2 M (NH4)2SO4

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