Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6FK5

Structure of 3' phosphatase NExo (D146N) from Neisseria bound to DNA substrate in presence of magnesium ion

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2013-02-08
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.96860
Spacegroup nameP 43 21 2
Unit cell lengths58.940, 58.940, 292.260
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.430 - 2.020
R-factor0.2316
Rwork0.230
R-free0.25750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2jc4
RMSD bond length0.005
RMSD bond angle0.874
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.4302.080
High resolution limit [Å]2.0202.020
Rmerge0.0410.314
Rmeas0.0580.444
Number of reflections35871
<I/σ(I)>7.4
Completeness [%]99.0
Redundancy2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.6277100 mM imidazole pH = 6.6, 55 mM (NH4)2SO4, 10% (w/v) PEG 8000, 16 - 19 % (v/v) MPD, 2 mM MgCl2

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon