6FK5
Structure of 3' phosphatase NExo (D146N) from Neisseria bound to DNA substrate in presence of magnesium ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-02-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.96860 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 58.940, 58.940, 292.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.430 - 2.020 |
R-factor | 0.2316 |
Rwork | 0.230 |
R-free | 0.25750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jc4 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.874 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.430 | 2.080 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.041 | 0.314 |
Rmeas | 0.058 | 0.444 |
Number of reflections | 35871 | |
<I/σ(I)> | 7.4 | |
Completeness [%] | 99.0 | |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 277 | 100 mM imidazole pH = 6.6, 55 mM (NH4)2SO4, 10% (w/v) PEG 8000, 16 - 19 % (v/v) MPD, 2 mM MgCl2 |