6FAS
Crystal structure of VAL1 B3 domain in complex with cognate DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.091, 86.577, 65.160 |
Unit cell angles | 90.00, 94.14, 90.00 |
Refinement procedure
Resolution | 43.289 - 1.900 |
R-factor | 0.1742 |
Rwork | 0.170 |
R-free | 0.21660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Structural models of VAL1-B3 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.322 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.290 | 1.968 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.029 | 0.524 |
Number of reflections | 66958 | 3404 |
<I/σ(I)> | 18.81 | 2.69 |
Completeness [%] | 99.0 | 99 |
Redundancy | 3.5 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 277 | 0.17 M Ammonium acetate 0.085 M Sodium citrate tribasic dihydrate pH 5.6 25.5% w/v Polyethylene glycol 4,000 15% v/v glycerol |