6FAK
Human afamin orthorhombic crystal form by controlled hydration
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-30 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 109.773, 113.325, 48.796 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 78.850 - 1.900 |
R-factor | 0.17905 |
Rwork | 0.177 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vue |
RMSD bond length | 0.014 |
RMSD bond angle | 1.611 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | BALBES |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 78.850 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.049 | 0.868 |
Rmeas | 0.058 | 1.031 |
Rpim | 0.030 | 0.547 |
Number of reflections | 48102 | 2967 |
<I/σ(I)> | 14.9 | 2 |
Completeness [%] | 98.9 | 95.8 |
Redundancy | 3.55 | 3.36 |
CC(1/2) | 0.999 | 0.728 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 30 % PEG 1000, 270 mM CH3COONH4, 3% 6-aminohexanoic acid (ACA). 1.5 uL 5 mg/mL Stock + 1.5 uL precipitant. Streak seeding followed by micro-seeding immediately after pipetting with no pre-equilibration of the drop. Controlled hydration experiment for data collection. |