6F4N
Human JMJD5 in complex with MN and 2OG.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 68.002, 68.002, 267.898 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.160 - 2.541 |
R-factor | 0.2009 |
Rwork | 0.199 |
R-free | 0.22990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gjz |
RMSD bond length | 0.005 |
RMSD bond angle | 0.877 |
Data reduction software | HKL-2000 (706E) |
Data scaling software | HKL-2000 (706E) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.160 | 2.630 |
High resolution limit [Å] | 2.540 | 2.540 |
Rmerge | 0.081 | 1.100 |
Rpim | 0.030 | 0.423 |
Number of reflections | 24683 | 2411 |
<I/σ(I)> | 25.1 | 1.8 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 9.4 | 8.7 |
CC(1/2) | 0.999 | 0.738 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 0.1 M Bis-Tris pH 6.0, 21.4 % PEG3350, 0.07 M MgCl2, 0.002 M MnCl2, 300 nl sitting drops (sample:well, 1:2 ratio) |