6F4E
Crystal structure of the zinc-free catalytic domain of botulinum neurotoxin X
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 52.258, 94.502, 113.042 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.400 - 2.400 |
R-factor | 0.21689 |
Rwork | 0.215 |
R-free | 0.25992 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6f47 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.314 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.400 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.123 | 0.971 |
Rmeas | 0.139 | 1.110 |
Rpim | 0.062 | 0.520 |
Number of reflections | 21016 | 2059 |
<I/σ(I)> | 8.9 | 2.1 |
Completeness [%] | 93.4 | 88.9 |
Redundancy | 8.4 | 7.8 |
CC(1/2) | 0.995 | 0.691 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294 | PEG 20000, MES pH 6.5, EDTA |