6F0D
Crystal structure of a llama VHH antibody BCD090-M2 against human ErbB3 in space group P1 with cadmium ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER IMUS MICROFOCUS |
Temperature [K] | 293.15 |
Detector technology | CCD |
Collection date | 2017-10-23 |
Detector | APEX II CCD |
Wavelength(s) | 1.54184 |
Spacegroup name | P 1 |
Unit cell lengths | 35.766, 41.526, 46.487 |
Unit cell angles | 89.99, 67.92, 76.06 |
Refinement procedure
Resolution | 32.342 - 1.900 |
R-factor | 0.178155788177 |
Rwork | 0.174 |
R-free | 0.21761 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ezw |
RMSD bond length | 0.014 |
RMSD bond angle | 1.531 |
Data reduction software | SAINT (V8.18C) |
Data scaling software | SADABS (2008/1) |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.342 | 32.346 | 1.933 |
High resolution limit [Å] | 1.900 | 5.151 | 1.900 |
Rmerge | 0.144 | 0.074 | 0.833 |
Rmeas | 0.150 | ||
Rpim | 0.040 | ||
Number of reflections | 18859 | 932 | 925 |
<I/σ(I)> | 12.9301230207 | 46.9236154713 | 1.56474169635 |
Completeness [%] | 100.0 | ||
Redundancy | 13.0920515404 | 20.017167382 | 4.79135135135 |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | Protein solution: 17 mg/ml in 20 mM HEPES pH 7.5, 50 mM NaCl Reservoir solution: 0.1 M MES pH 6.5, 12% w/v PEG 3350, 5 mM CdSO4 |