6EYU
Crystal structure of the inward H(+) pump xenorhodopsin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-27 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.010, 93.870, 196.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 12.000 - 2.500 |
R-factor | 0.2119 |
Rwork | 0.210 |
R-free | 0.25400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xio |
RMSD bond length | 0.001 |
RMSD bond angle | 0.427 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 12.000 | 12.000 | 2.560 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.286 | 0.057 | 1.859 |
Rmeas | 0.293 | 0.059 | 1.914 |
Number of reflections | 41796 | 542 | 3062 |
<I/σ(I)> | 9.56 | 45.46 | 0.98 |
Completeness [%] | 100.0 | 98.4 | 99.9 |
Redundancy | 21.562 | 19.45 | 17.759 |
CC(1/2) | 0.999 | 0.999 | 0.329 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 295 | 1:1 protein-solution-to-monoundecenoin ratio; protein concentration of 30mg/ml; 2.8 - 3.4 M sodium malonate; pH 8.0. |