6EUX
Structure of the midlink and cap-binding domains of influenza B polymerase PB2 subunit with a bound azaindazole cap-binding inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-02 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 73.200, 73.200, 103.740 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.140 - 2.050 |
R-factor | 0.23065 |
Rwork | 0.229 |
R-free | 0.25404 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wsa |
RMSD bond length | 0.007 |
RMSD bond angle | 1.070 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.150 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.119 | 1.100 |
Number of reflections | 20671 | |
<I/σ(I)> | 10.46 | 1.75 |
Completeness [%] | 99.7 | 99.7 |
Redundancy | 5.7 | 5.78 |
CC(1/2) | 0.997 | 0.644 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | Crystals were obtained by mixing FluB double domain at 15 mg/ml in 50 mM Tris pH 7.5 and 10% glycerol and 5 mM of VX-787 with 0.1 M PTCP and 25% PEG1500. |