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6ESQ

Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-27
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.64861
Spacegroup nameP 21 21 21
Unit cell lengths107.603, 145.176, 230.891
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.290 - 2.950
R-factor0.184
Rwork0.182
R-free0.23000
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.580
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.3003.110
High resolution limit [Å]2.9502.950
Rmerge0.1432.024
Rpim0.0400.577
Number of reflections7636310942
<I/σ(I)>14.91.3
Completeness [%]99.498.8
Redundancy13.313.1
CC(1/2)0.9990.481
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293Crystallization was done under air using the sitting drop method (in a 24-well junior clover plate from Jena Bioscience). The crystallization reservoir contained 100 mM Tris/HCl pH 8.0, 25-28% v/v pentaerythritol ethoxylate (15/4 EO/OH, average Mn about 797) and 50 mM MgCl2. Crystallization drop contained 1 to 2 ul of the purified fraction containing Thiolase/HMGCS complex at 50-60 mg/ml (pure at 60%) and 1 ul of precipitant. The crystal was soaked in the crystallization condition supplemented 100 mM acetyl-CoA for 1 min 30 sec.

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PDB entries from 2024-08-07

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