6EQJ
Crystal Structure of Human Glycogenin-1 (GYG1) Tyr195pIPhe mutant, apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 59.030, 101.020, 49.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.967 - 2.180 |
R-factor | 0.2304 |
Rwork | 0.229 |
R-free | 0.26040 |
RMSD bond length | 0.001 |
RMSD bond angle | 0.387 |
Data reduction software | xia2 |
Data scaling software | Aimless (0.5.1) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 101.020 | 101.020 | 2.240 |
High resolution limit [Å] | 2.180 | 9.750 | 2.180 |
Rmerge | 0.074 | 0.037 | 0.771 |
Rmeas | 0.081 | 0.042 | 0.933 |
Rpim | 0.033 | 0.018 | 0.510 |
Total number of observations | 88786 | ||
Number of reflections | 15830 | 225 | 1042 |
<I/σ(I)> | 12.6 | ||
Completeness [%] | 98.6 | 99.7 | 89.6 |
Redundancy | 5.6 | 5 | 2.8 |
CC(1/2) | 0.998 | 0.998 | 0.664 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 293.15 | 28% PEG smear broad, 0.1M sodium/potassium phosphate pH 6.2, 0.2M sodium chloride |