6EOF
Crystal structure of AMPylated GRP78 in ADP state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.047, 75.610, 97.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.750 - 1.590 |
R-factor | 0.20717 |
Rwork | 0.206 |
R-free | 0.22479 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o4p |
RMSD bond length | 0.008 |
RMSD bond angle | 1.332 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 97.500 | 1.610 |
High resolution limit [Å] | 1.590 | 1.590 |
Rmerge | 0.131 | 0.906 |
Rmeas | 0.145 | 0.988 |
Number of reflections | 69830 | 3451 |
<I/σ(I)> | 8.8 | 2.2 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.5 | 6.4 |
CC(1/2) | 0.990 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.4 | 293 | 9% PEG1000, 0.1M Na2HPO4-Citrate, ph4.4, 0.2M Li2SO4 |