6EOC
Crystal structure of AMPylated GRP78 in apo form (Crystal form 2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.088, 75.408, 98.308 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.830 - 1.670 |
R-factor | 0.21305 |
Rwork | 0.211 |
R-free | 0.24923 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o4p |
RMSD bond length | 0.007 |
RMSD bond angle | 1.184 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.410 | 1.700 |
High resolution limit [Å] | 1.670 | 1.670 |
Rmerge | 0.086 | 0.794 |
Rmeas | 0.096 | 0.861 |
Rpim | 0.051 | 0.464 |
Number of reflections | 59490 | 2986 |
<I/σ(I)> | 12 | 2.1 |
Completeness [%] | 98.3 | 100 |
Redundancy | 6.6 | 6.7 |
CC(1/2) | 0.997 | 0.888 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 5% PEG1000, 0.1M Na2HPO4-Citrate, ph4.2, 0.2M LI2SO4 |