6EOB
Crystal structure of AMPylated GRP78 in apo form (Crystal form 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-14 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.650, 69.070, 122.230 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.120 - 2.000 |
R-factor | 0.24014 |
Rwork | 0.238 |
R-free | 0.27955 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o4p |
RMSD bond length | 0.007 |
RMSD bond angle | 1.151 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.120 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.158 | 1.310 |
Rpim | 0.094 | 0.782 |
Number of reflections | 37758 | 2743 |
<I/σ(I)> | 8.5 | 1.5 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.1 | 7.2 |
CC(1/2) | 0.995 | 0.522 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG1000, 0.1M NaKHPO4, PH6.2, 0.1M NaCl |