6EEP
Crystal Structure of Ribose-5-phosphate Isomerase from Legionella pneumophila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-28 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.630, 67.930, 74.000 |
Unit cell angles | 90.00, 119.54, 90.00 |
Refinement procedure
Resolution | 32.190 - 1.850 |
R-factor | 0.1613 |
Rwork | 0.158 |
R-free | 0.21640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4x84 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((1.14_3219)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.190 | 32.190 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.058 | 0.032 | 0.548 |
Rmeas | 0.067 | 0.037 | 0.626 |
Total number of observations | 155837 | ||
Number of reflections | 37853 | 442 | 2820 |
<I/σ(I)> | 13.97 | 31.97 | 2.54 |
Completeness [%] | 97.7 | 95.5 | 97.3 |
Redundancy | 4.117 | 3.647 | 4.242 |
CC(1/2) | 0.998 | 0.997 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | LepnA.00944.a.B1.PS38423 at 22.85 mg/ml was mixed 1:1 with MCSG1(B8): 25.5% (w/v) PEG-4,000, 15% (v/v) Glycerol, 0.085 M Tris Base / Hydrochloric, 0.17 M Sodium Acetate, pH = 8.5. Tray: 300294b8. Puck: jve-8 |