6EE7
Small tetraheme cytochrome c from Shewanella oneidensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-19 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.999999 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 24.595, 63.856, 28.979 |
Unit cell angles | 90.00, 97.21, 90.00 |
Refinement procedure
Resolution | 16.922 - 1.394 |
R-factor | 0.1658 |
Rwork | 0.164 |
R-free | 0.18320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1m1r |
RMSD bond length | 0.024 |
RMSD bond angle | 1.698 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 16.922 | 1.470 |
High resolution limit [Å] | 1.394 | 1.390 |
Rmerge | 0.082 | 0.612 |
Rpim | 0.041 | 0.310 |
Number of reflections | 34487 | 3220 |
<I/σ(I)> | 10.8 | 3.1 |
Completeness [%] | 98.8 | 95.2 |
Redundancy | 4.7 | 4.5 |
CC(1/2) | 0.997 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 5 mg/mL of purified cytochrome (1 mM HEPES pH 8.0) were mixed with reservoir solution (16 PEG 3350, 15 mM ZnSO4 in 1:1 (v/v) ratio and placed at 277 K in sitting drop vapor diffusion dishes. Crystals were harvested after ca. 10 days and transferred to 30% PEG 400 before freezing in liquid nitrogen |