6ECD
Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a tetradepsipeptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-13 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | .9792 |
Spacegroup name | P 4 3 2 |
Unit cell lengths | 152.298, 152.298, 152.298 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 107.690 - 1.900 |
R-factor | 0.1895 |
Rwork | 0.188 |
R-free | 0.21410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ecb |
RMSD bond length | 0.017 |
RMSD bond angle | 1.401 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 107.690 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.123 | |
Rmeas | 0.124 | |
Rpim | 0.020 | |
Number of reflections | 48063 | 3071 |
<I/σ(I)> | 23.3 | |
Completeness [%] | 100.0 | |
Redundancy | 37.2 | |
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 295 | 1.65 M DL-malic acid, pH 8.0, 25 mM HEPES, pH 8.0, 100 mM sodium chloride, 0.2 mM TCEP |