6E8Y
Unliganded Human Glycerol 3-Phosphate Dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.370, 76.160, 64.390 |
Unit cell angles | 90.00, 96.03, 90.00 |
Refinement procedure
Resolution | 47.480 - 1.850 |
R-factor | 0.1723 |
Rwork | 0.170 |
R-free | 0.21020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6e8z |
RMSD bond length | 0.011 |
RMSD bond angle | 1.048 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.480 | 1.920 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.074 | 0.314 |
Rmeas | 0.089 | 0.385 |
Number of reflections | 51748 | 5043 |
<I/σ(I)> | 8 | |
Completeness [%] | 99.4 | 97.6 |
Redundancy | 3.2 | 3 |
CC(1/2) | 0.995 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 287 | 175 mM potassium chloride, 23% PEG 20000, 0.1M bis-tris propane pH 7.0; 10 mg/mL |