6E85
1.25 Angstrom Resolution Crystal Structure of 4-hydroxythreonine-4-phosphate Dehydrogenase from Klebsiella pneumoniae.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-07-24 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 97.355, 76.216, 92.113 |
Unit cell angles | 90.00, 106.78, 90.00 |
Refinement procedure
Resolution | 29.670 - 1.250 |
R-factor | 0.11509 |
Rwork | 0.114 |
R-free | 0.13920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hi1 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.283 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MoRDa |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.270 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmerge | 0.053 | 0.549 |
Rmeas | 0.060 | 0.654 |
Rpim | 0.028 | 0.349 |
Number of reflections | 177342 | 8637 |
<I/σ(I)> | 24.6 | 2.3 |
Completeness [%] | 99.8 | 97.7 |
Redundancy | 4.3 | 3.3 |
CC(1/2) | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 292 | Protein: 6.9 mg/ml, 0.01M Tris-HCl pH 8.3; Screen: Classics II (G2), 0.2M Lithium sulfate, 0.1M Bis-Tris pH 5.5, 25% (w/v) PEG 3350; |