6E5D
Crystal structure of LpqN involved in cell envelope biogenesis of Mycobacterium tuberculosis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2018-06-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 99.309, 55.521, 44.614 |
Unit cell angles | 90.00, 103.89, 90.00 |
Refinement procedure
Resolution | 48.112 - 1.650 |
R-factor | 0.1868 |
Rwork | 0.186 |
R-free | 0.20850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SAD-phased LpqN model |
RMSD bond length | 0.002 |
RMSD bond angle | 0.545 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14rc1_3177: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 1.710 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.044 | 0.271 |
Rmeas | 0.054 | 0.465 |
Rpim | 0.020 | 0.187 |
Number of reflections | 27327 | 2452 |
<I/σ(I)> | 19 | 2.9 |
Completeness [%] | 96.1 | 87.3 |
Redundancy | 6.9 | 5.3 |
CC(1/2) | 0.999 | 0.956 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 295 | 0.1 M sodium citrate, pH 6.0, 1.5 M ammonium sulfate |