6E40
Crystal structure of the indoleamine 2,3-dioxygenase 1 (IDO1) in complexed with ferric heme and Epacadostat
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 80.367, 200.144, 114.741 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.857 - 2.306 |
R-factor | 0.21 |
Rwork | 0.208 |
R-free | 0.25370 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.200 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.857 | 46.857 | 2.450 |
High resolution limit [Å] | 2.306 | 6.860 | 2.310 |
Rmerge | 0.063 | 0.027 | 0.732 |
Rmeas | 0.074 | 0.031 | 0.846 |
Number of reflections | 81202 | 3245 | 12908 |
<I/σ(I)> | 11.96 | 35.62 | 1.72 |
Completeness [%] | 98.8 | 95.4 | 98.4 |
Redundancy | 3.755 | 3.479 | 3.893 |
CC(1/2) | 0.999 | 0.999 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.2 | 298 | 0.1 M phosphate (pH 6.2), and 15% (w/v) PEG3350 |