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6E3A

tRNA 2'-phosphotransferase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2018-06-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.20510
Spacegroup nameP 61 2 2
Unit cell lengths53.367, 53.367, 308.903
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.217 - 1.400
R-factor0.1625
Rwork0.162
R-free0.18570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1wfx
RMSD bond length0.015
RMSD bond angle1.467
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.420
High resolution limit [Å]1.4001.400
Rpim0.0160.252
Number of reflections530832505
<I/σ(I)>24.1
Completeness [%]99.897.8
Redundancy17.510.9
CC(1/2)0.9950.830
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.1M MES pH 6.0, 10 %MPD

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PDB entries from 2024-04-17

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