6E0S
Crystal structure of MEM-A1, a subclass B3 metallo-beta-lactamase isolated from a soil metagenome library
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-03-10 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.313, 68.649, 78.588 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.361 - 1.780 |
R-factor | 0.1575 |
Rwork | 0.154 |
R-free | 0.19530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iqk |
RMSD bond length | 0.011 |
RMSD bond angle | 0.950 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((dev_3092: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.810 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.095 | 0.979 |
Rpim | 0.044 | 0.477 |
Number of reflections | 24163 | 1192 |
<I/σ(I)> | 24.97 | 2.09 |
Completeness [%] | 99.9 | 100 |
Redundancy | 5.5 | 5.1 |
CC(1/2) | 0.639 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 50 mM pyrophosphate+tetrapolyphosphate, 0.1 M HEPES pH 7.5, 25% PEG3350, cryoprotectant paratone |