6DYF
Cu(II)-bound structure of the engineered cyt cb562 variant, CH3Y
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.742, 82.882, 38.528 |
Unit cell angles | 90.00, 98.96, 90.00 |
Refinement procedure
Resolution | 41.441 - 1.100 |
R-factor | 0.1473 |
Rwork | 0.147 |
R-free | 0.16490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.044 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.441 | 1.130 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.052 | 0.644 |
Number of reflections | 87061 | 7327 |
<I/σ(I)> | 16.8 | 2.46 |
Completeness [%] | 87.0 | 84.45 |
Redundancy | 6.5 | 6 |
CC(1/2) | 0.999 | 0.941 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | Drop consists of 2 uL of 30% PEG 400, 200 mM Magnesium Choride and 0.1 M Bis-Tris (pH 5.5) mixed with 1 uL of 2.7 mM protein and 1.5 mM Copper(II) Sulfate |