6DP7
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 500 mM Mn2+ and 200 mM K+ for 40 s at 21 C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-BM-B |
Synchrotron site | APS |
Beamline | 23-BM-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-25 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 82.013, 37.557, 61.932 |
Unit cell angles | 90.00, 96.79, 90.00 |
Refinement procedure
Resolution | 17.983 - 1.381 |
R-factor | 0.1698 |
Rwork | 0.169 |
R-free | 0.19230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zbl |
RMSD bond length | 0.007 |
RMSD bond angle | 0.946 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 17.980 | 1.400 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.061 | 0.296 |
Rmeas | 0.086 | 0.419 |
Rpim | 0.061 | 0.296 |
Total number of observations | 74048 | 2990 |
Number of reflections | 38088 | 1523 |
<I/σ(I)> | 10.1 | 4.1 |
Completeness [%] | 98.3 | 76.4 |
Redundancy | 1.9 | 2 |
CC(1/2) | 0.985 | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2 |