6DNL
Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the reduced form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-09-30 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.250, 28.060, 45.800 |
Unit cell angles | 90.00, 100.96, 90.00 |
Refinement procedure
Resolution | 34.298 - 1.700 |
R-factor | 0.1789 |
Rwork | 0.177 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.965 | 34.298 | 1.790 |
High resolution limit [Å] | 1.700 | 5.380 | 1.700 |
Rmerge | 0.053 | 0.531 | |
Rmeas | 0.116 | 0.062 | 0.614 |
Rpim | 0.059 | 0.031 | 0.306 |
Number of reflections | 12150 | 418 | 1750 |
<I/σ(I)> | 7.5 | 12.6 | 1.4 |
Completeness [%] | 99.8 | 99 | 99.9 |
Redundancy | 3.8 | 3.6 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 293 | 0.2 M zinc acetate dehydrate, 0.1 M sodium cacodylate trihydrate pH 7.5 and 18% w/v PEG 8000 |