6DLT
PRPP Riboswitch bound to PRPP, native structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 83.567, 90.756, 74.174 |
Unit cell angles | 90.00, 122.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.900 |
R-factor | 0.22548 |
Rwork | 0.225 |
R-free | 0.24349 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.237 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.000 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.156 | 0.632 |
Rpim | 0.081 | 0.298 |
Number of reflections | 9366 | |
<I/σ(I)> | 15.7 | |
Completeness [%] | 92.4 | |
Redundancy | 5.1 | |
CC(1/2) | 0.881 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v) |