Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DLT

PRPP Riboswitch bound to PRPP, native structure

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-27
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameC 1 2 1
Unit cell lengths83.567, 90.756, 74.174
Unit cell angles90.00, 122.00, 90.00
Refinement procedure
Resolution20.000 - 2.900
R-factor0.22548
Rwork0.225
R-free0.24349
RMSD bond length0.005
RMSD bond angle1.237
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0003.000
High resolution limit [Å]2.9002.900
Rmerge0.1560.632
Rpim0.0810.298
Number of reflections9366
<I/σ(I)>15.7
Completeness [%]92.4
Redundancy5.1
CC(1/2)0.881
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v)

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon