6DLR
PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-21 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.1051 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 83.520, 92.677, 74.487 |
Unit cell angles | 90.00, 121.21, 90.00 |
Refinement procedure
Resolution | 19.535 - 2.656 |
R-factor | 0.1997 |
Rwork | 0.197 |
R-free | 0.22170 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.551 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.740 |
High resolution limit [Å] | 2.650 | 2.650 |
Rmerge | 0.119 | 0.563 |
Rpim | 0.073 | 0.349 |
Number of reflections | 24713 | |
<I/σ(I)> | 27.2 | |
Completeness [%] | 96.5 | |
Redundancy | 3.4 | |
CC(1/2) | 0.808 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v) |