6DKY
Crystal structure of ribifolin, an orbitide from Jatropha ribifolia
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 19.142, 23.632, 23.851 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 16.790 - 1.239 |
R-factor | 0.1992 |
Rwork | 0.196 |
R-free | 0.22260 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.689 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | SHELXCD |
Refinement software | PHENIX ((1.10_2142: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 16.790 | 1.284 |
High resolution limit [Å] | 1.239 | 1.239 |
Rmerge | 0.062 | 0.224 |
Number of reflections | 3333 | |
<I/σ(I)> | 18.4 | |
Completeness [%] | 99.9 | |
Redundancy | 11.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.1 M Tris base (pH 8.0) and 40% 2-methyl-2,4-pentanediol (MPD) |