6DJQ
Vps1 GTPase-BSE fusion complexed with GDP.AlF4-
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-04 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.96922 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.060, 121.220, 104.560 |
Unit cell angles | 90.00, 90.60, 90.00 |
Refinement procedure
Resolution | 39.595 - 3.100 |
R-factor | 0.225 |
Rwork | 0.222 |
R-free | 0.27850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zyc |
RMSD bond length | 0.003 |
RMSD bond angle | 0.591 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.14) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.410 | 3.290 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.098 | 0.505 |
Rmeas | 0.134 | 0.411 |
Rpim | 0.091 | 0.474 |
Number of reflections | 26055 | 3987 |
<I/σ(I)> | 8.2 | 2 |
Completeness [%] | 84.4 | 79.9 |
Redundancy | 2 | 2 |
CC(1/2) | 0.980 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 5-10% PEG8000, 20% glycerol, 0.08 M MES, pH 5.6-6.2 |