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6DJ9

Structure of the USP15 DUSP domain in complex with a high-affinity Ubiquitin Variant (UbV)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 63
Unit cell lengths152.410, 152.410, 125.461
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution90.935 - 3.100
R-factor0.2548
Rwork0.253
R-free0.26720
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB 4A3O
RMSD bond length0.003
RMSD bond angle0.650
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]90.9353.090
High resolution limit [Å]2.9302.930
Rmerge0.1021.463
Rmeas0.1131.621
Rpim0.0490.694
Number of reflections6983010150
<I/σ(I)>8.81.2
Completeness [%]100.0100
Redundancy5.35.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529816% PEG6K, 100 mM Sodium Citrate, pH 5.0, 100 mM MgCl2, cryoprotected in 20% PEG6K, 100 mM Sodium Citrate, pH 5.0, 100 mM MgCl2, 30% ethylene glycol

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