6DJ9
Structure of the USP15 DUSP domain in complex with a high-affinity Ubiquitin Variant (UbV)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 63 |
Unit cell lengths | 152.410, 152.410, 125.461 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 90.935 - 3.100 |
R-factor | 0.2548 |
Rwork | 0.253 |
R-free | 0.26720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB 4A3O |
RMSD bond length | 0.003 |
RMSD bond angle | 0.650 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.935 | 3.090 |
High resolution limit [Å] | 2.930 | 2.930 |
Rmerge | 0.102 | 1.463 |
Rmeas | 0.113 | 1.621 |
Rpim | 0.049 | 0.694 |
Number of reflections | 69830 | 10150 |
<I/σ(I)> | 8.8 | 1.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 5.3 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 16% PEG6K, 100 mM Sodium Citrate, pH 5.0, 100 mM MgCl2, cryoprotected in 20% PEG6K, 100 mM Sodium Citrate, pH 5.0, 100 mM MgCl2, 30% ethylene glycol |