6DGJ
Cronobacter turicensis RpfR quorum-sensing receptor PAS domain in complex with BDSF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 2017-09-25 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.932, 29.150, 41.554 |
Unit cell angles | 90.00, 115.49, 90.00 |
Refinement procedure
Resolution | 37.509 - 2.294 |
R-factor | 0.2334 |
Rwork | 0.228 |
R-free | 0.28230 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.522 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.340 |
High resolution limit [Å] | 2.294 | 6.240 | 2.294 |
Rmerge | 0.206 | 0.082 | 0.618 |
Rmeas | 0.239 | 0.098 | 0.719 |
Rpim | 0.120 | 0.052 | 0.363 |
Number of reflections | 4004 | 221 | 187 |
<I/σ(I)> | 9.33 | ||
Completeness [%] | 99.9 | 99.5 | 100 |
Redundancy | 3.9 | 3.5 | 3.8 |
CC(1/2) | 0.682 | 0.990 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 150 mM lithium citrate and 16% (vol/vol) PEG 3350 |