6DFA
Kaiso (ZBTB33) E535A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9765 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 44.372, 183.587, 104.706 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.477 - 1.908 |
R-factor | 0.1831 |
Rwork | 0.181 |
R-free | 0.20330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4f6m |
RMSD bond length | 0.011 |
RMSD bond angle | 1.125 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.9_1692) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.477 | 1.980 |
High resolution limit [Å] | 1.908 | 1.908 |
Rmerge | 0.077 | |
Rmeas | 0.083 | |
Number of reflections | 33416 | 2981 |
<I/σ(I)> | 10.28 | 1.65 |
Completeness [%] | 98.6 | 89.75 |
Redundancy | 6.8 | 5.4 |
CC(1/2) | 0.999 | 0.678 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 295 | 0.2 M Disodium Tartrate, 20 % PEG 3350 |