6DEF
Vps1 GTPase-BSE fusion complexed with GMPPCP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 82.659, 118.740, 84.140 |
Unit cell angles | 90.00, 99.30, 90.00 |
Refinement procedure
Resolution | 40.786 - 2.260 |
R-factor | 0.1947 |
Rwork | 0.193 |
R-free | 0.22530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zyc |
RMSD bond length | 0.002 |
RMSD bond angle | 0.527 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.790 | 2.310 |
High resolution limit [Å] | 2.260 | 2.260 |
Rmerge | 0.068 | 0.445 |
Rmeas | 0.080 | 0.590 |
Rpim | 0.042 | 0.316 |
Number of reflections | 69139 | 4347 |
<I/σ(I)> | 10.6 | 2.1 |
Completeness [%] | 92.4 | 90.5 |
Redundancy | 3.6 | 3.4 |
CC(1/2) | 0.997 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 14% PEG4000, 0.2 M sodium acetate, 0.1 M Tris-Cl, pH 8.7-9.0 |